changeo
stable

Getting Started

  • Overview
  • Download
  • Installation
  • Data Standard

Examples

  • Using IgBLAST
  • Parsing IMGT output
  • Parsing 10X Genomics V(D)J data
  • Filtering records
  • Clustering sequences into clonal groups
  • Reconstructing germline sequences
  • IgPhyML lineage tree analysis
  • Generating MiAIRR compliant GenBank/TLS submissions

Methods

  • Clonal clustering methods
  • Reconstruction of germline sequences from alignment data

Usage Documentation

  • Commandline Usage
  • API

About

  • Release Notes
  • Contact
  • Citation
  • License

Related Projects

  • Immcantation Portal
  • pRESTO
  • Alakazam
  • SHazaM
  • TIgGER
  • RDI
changeo
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© Copyright Kleinstein Lab, Yale University, 2018 Revision 9b7b6310370e.

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