changeo
0.4.6
Getting Started
Overview
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Installation
Data Standard
Examples
Using IgBLAST
Parsing IMGT output
Parsing 10X Genomics V(D)J data
Filtering records
Clustering sequences into clonal groups
Reconstructing germline sequences
IgPhyML lineage tree analysis
Generating MiAIRR compliant GenBank/TLS submissions
Methods
Clonal clustering methods
Reconstruction of germline sequences from alignment data
Usage Documentation
Commandline Usage
AlignRecords
AssignGenes
BuildTrees
ConvertDb
CreateGermlines
DefineClones
MakeDb
ParseDb
API
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Commandline Usage
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Commandline Usage
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AlignRecords
AlignRecords across
AlignRecords block
AlignRecords within
AssignGenes
AssignGenes igblast
BuildTrees
ConvertDb
ConvertDb airr
ConvertDb baseline
ConvertDb changeo
ConvertDb fasta
ConvertDb genbank
CreateGermlines
DefineClones
MakeDb
MakeDb igblast
MakeDb ihmm
MakeDb imgt
ParseDb
ParseDb add
ParseDb delete
ParseDb drop
ParseDb index
ParseDb merge
ParseDb rename
ParseDb select
ParseDb sort
ParseDb split
ParseDb update
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v: 0.4.6
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0.4.6
version-0.4.5
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