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Getting Started

  • Overview
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  • Installation
  • Data Standards
  • Release Notes

Usage Documentation

  • Commandline Usage
  • API
    • changeo.Alignment
    • changeo.Applications
    • changeo.Commandline
    • changeo.Distance
    • changeo.Gene
    • changeo.IO
    • changeo.Multiprocessing
    • changeo.Receptor

Examples

  • Using IgBLAST
  • Parsing IMGT output
  • Parsing 10X Genomics V(D)J data
  • Filtering records
  • Clustering sequences into clonal groups
  • Reconstructing germline sequences
  • IgPhyML lineage tree analysis
  • Generating MiAIRR compliant GenBank/TLS submissions

Methods

  • Clonal clustering methods
  • Reconstruction of germline sequences from alignment data

About

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  • License
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APIΒΆ

  • changeo.Alignment
  • changeo.Applications
  • changeo.Commandline
  • changeo.Distance
  • changeo.Gene
  • changeo.IO
  • changeo.Multiprocessing
  • changeo.Receptor
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© Copyright Kleinstein Lab, Yale University, 2021. Revision dd7d265b.

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