API
- changeo.Alignment
- changeo.Applications
- changeo.Commandline
- changeo.Distance
- changeo.Gene
- changeo.IO
- changeo.Multiprocessing
- changeo.Receptor
AIRRSchema
AIRRSchemaAA
ChangeoSchema
ChangeoSchemaAA
Receptor
Receptor.d_germ_aa_end
Receptor.d_germ_end
Receptor.d_seq_aa_end
Receptor.d_seq_end
Receptor.getAIRR()
Receptor.getAlleleCalls()
Receptor.getAlleleNumbers()
Receptor.getChangeo()
Receptor.getDAllele()
Receptor.getDAlleleNumber()
Receptor.getDFamily()
Receptor.getDGene()
Receptor.getFamilyCalls()
Receptor.getField()
Receptor.getGeneCalls()
Receptor.getJAllele()
Receptor.getJAlleleNumber()
Receptor.getJFamily()
Receptor.getJGene()
Receptor.getSeq()
Receptor.getVAllele()
Receptor.getVAlleleNumber()
Receptor.getVFamily()
Receptor.getVGene()
Receptor.j_germ_aa_end
Receptor.j_germ_end
Receptor.j_seq_aa_end
Receptor.j_seq_end
Receptor.junction_end
Receptor.setDict()
Receptor.setField()
Receptor.toDict()
Receptor.v_germ_aa_end_imgt
Receptor.v_germ_aa_end_vdj
Receptor.v_germ_end_imgt
Receptor.v_germ_end_vdj
Receptor.v_seq_aa_end
Receptor.v_seq_end
ReceptorData
ReceptorData.sequence_id
ReceptorData.rev_comp
ReceptorData.functional
ReceptorData.in_frame
ReceptorData.stop
ReceptorData.mutated_invariant
ReceptorData.indels
ReceptorData.v_frameshift
ReceptorData.sequence_input
ReceptorData.sequence_vdj
ReceptorData.sequence_imgt
ReceptorData.sequence_aa_input
ReceptorData.sequence_aa_vdj
ReceptorData.sequence_aa_imgt
ReceptorData.junction
ReceptorData.junction_aa
ReceptorData.junction_start
ReceptorData.junction_length
ReceptorData.germline_vdj
ReceptorData.germline_vdj_d_mask
ReceptorData.germline_imgt
ReceptorData.germline_imgt_d_mask
ReceptorData.germline_aa_vdj
ReceptorData.germline_aa_imgt
ReceptorData.v_call
ReceptorData.d_call
ReceptorData.j_call
ReceptorData.c_call
ReceptorData.v_seq_start
ReceptorData.v_seq_length
ReceptorData.v_germ_start_imgt
ReceptorData.v_germ_length_imgt
ReceptorData.v_germ_start_vdj
ReceptorData.v_germ_length_vdj
ReceptorData.v_seq_aa_start
ReceptorData.v_seq_aa_length
ReceptorData.v_germ_aa_start_imgt
ReceptorData.v_germ_aa_length_imgt
ReceptorData.v_germ_aa_start_vdj
ReceptorData.v_germ_aa_length_vdj
ReceptorData.np1_start
ReceptorData.np1_length
ReceptorData.np1_aa_start
ReceptorData.np1_aa_length
ReceptorData.d_seq_start
ReceptorData.d_seq_length
ReceptorData.d_germ_start
ReceptorData.d_germ_length
ReceptorData.d_seq_aa_start
ReceptorData.d_seq_aa_length
ReceptorData.d_germ_aa_start
ReceptorData.d_germ_aa_length
ReceptorData.np2_start
ReceptorData.np2_length
ReceptorData.np2_aa_start
ReceptorData.np2_aa_length
ReceptorData.j_seq_start
ReceptorData.j_seq_length
ReceptorData.j_germ_start
ReceptorData.j_germ_length
ReceptorData.j_seq_aa_start
ReceptorData.j_seq_aa_length
ReceptorData.j_germ_aa_start
ReceptorData.j_germ_aa_length
ReceptorData.v_score
ReceptorData.v_identity
ReceptorData.v_evalue
ReceptorData.v_btop
ReceptorData.v_cigar
ReceptorData.d_score
ReceptorData.d_identity
ReceptorData.d_evalue
ReceptorData.d_btop
ReceptorData.d_cigar
ReceptorData.j_score
ReceptorData.j_identity
ReceptorData.j_evalue
ReceptorData.j_btop
ReceptorData.j_cigar
ReceptorData.vdj_score
ReceptorData.fwr1_imgt
ReceptorData.fwr2_imgt
ReceptorData.fwr3_imgt
ReceptorData.fwr4_imgt
ReceptorData.cdr1_imgt
ReceptorData.cdr2_imgt
ReceptorData.cdr3_imgt
ReceptorData.cdr3_igblast
ReceptorData.fwr1_aa_imgt
ReceptorData.fwr2_aa_imgt
ReceptorData.fwr3_aa_imgt
ReceptorData.fwr4_aa_imgt
ReceptorData.cdr1_aa_imgt
ReceptorData.cdr2_aa_imgt
ReceptorData.cdr3_aa_imgt
ReceptorData.cdr3_igblast_aa
ReceptorData.n1_length
ReceptorData.n2_length
ReceptorData.p3v_length
ReceptorData.p5d_length
ReceptorData.p3d_length
ReceptorData.p5j_length
ReceptorData.d_frame
ReceptorData.conscount
ReceptorData.dupcount
ReceptorData.umicount
ReceptorData.clone
ReceptorData.cell
ReceptorData.annotations
ReceptorData.aminoacid()
ReceptorData.double()
ReceptorData.end_fields
ReceptorData.identity()
ReceptorData.integer()
ReceptorData.length_fields
ReceptorData.logical()
ReceptorData.nucleotide()
ReceptorData.parsers
ReceptorData.start_fields