changeo
1.1.0
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Getting Started
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Data Standards
Examples
Using IgBLAST
Parsing IMGT output
Parsing 10X Genomics V(D)J data
Filtering records
Clustering sequences into clonal groups
Reconstructing germline sequences
IgPhyML lineage tree analysis
Generating MiAIRR compliant GenBank/TLS submissions
Methods
Clonal clustering methods
Reconstruction of germline sequences from alignment data
Usage Documentation
Commandline Usage
AlignRecords.py
AssignGenes.py
BuildTrees.py
ConvertDb.py
CreateGermlines.py
DefineClones.py
MakeDb.py
ParseDb.py
API
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Commandline Usage
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Commandline Usage
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AlignRecords.py
AlignRecords.py across
AlignRecords.py block
AlignRecords.py within
AssignGenes.py
AssignGenes.py igblast
AssignGenes.py igblast-aa
BuildTrees.py
ConvertDb.py
ConvertDb.py airr
ConvertDb.py baseline
ConvertDb.py changeo
ConvertDb.py fasta
ConvertDb.py genbank
CreateGermlines.py
DefineClones.py
MakeDb.py
MakeDb.py igblast
MakeDb.py igblast-aa
MakeDb.py ihmm
MakeDb.py imgt
ParseDb.py
ParseDb.py add
ParseDb.py delete
ParseDb.py drop
ParseDb.py index
ParseDb.py merge
ParseDb.py rename
ParseDb.py select
ParseDb.py sort
ParseDb.py split
ParseDb.py update
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v: 1.1.0
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